Transcript: LINC00649:12

Basic information

LNCipedia transcript ID: LINC00649:12 
LNCipedia gene ID: LINC00649
Location (hg38): chr21:33931563-33935823
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 214 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029211; NONHSAT081843
Alternative gene names: XLOC_013921; linc-SLC5A3-2; TCONS_00028768


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -266.786 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00649:12 yes no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITSN1-2:4
3.1 lnc-ITSN1-2:4
4.0 LINC00649:12
4.1 LINC00649:12
5.0 LINC00649:12
5.1 LINC00649:12
5.2 LINC00649:12