Transcript: LINC00649:13

Basic information

LNCipedia transcript ID: LINC00649:13 
LNCipedia gene ID: LINC00649
Location (hg38): chr21:33931634-33978859
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2586 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029003; NONHSAT081844
Alternative gene names: XLOC_013921; linc-SLC5A3-2; TCONS_00028768


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.6167 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00649:13 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITSN1-2:5
3.1 lnc-ITSN1-2:5
4.0 LINC00649:13
4.1 LINC00649:13
5.0 LINC00649:13
5.1 LINC00649:13
5.2 LINC00649:13