Transcript: LINC00649:18

Basic information

LNCipedia transcript ID: LINC00649:18 
HGNC Gene Symbol: LINC00649    
HGNC Full Gene Name: long intergenic non-protein coding RNA 649
Ensembl Gene ID: ENSG00000237945
Ensembl Transcript ID: ENST00000595747
Location (hg38): chr21:33944588-33969598
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 796 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT081848; ENST00000595747.1; ENST00000595747.5
Alternative gene names: ENSG00000237945.3; LINC00649; ENSG00000237945.7; TCONS_00028768


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.6167 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00649:18 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITSN1-2:17
4.0 LINC00649:18
4.1 LINC00649:18
5.0 LINC00649:18
5.1 LINC00649:18
5.2 LINC00649:18