Transcript: LINC00649:31

Basic information

LNCipedia transcript ID: LINC00649:31 
LNCipedia gene ID: LINC00649
Location (hg38): chr21:33931614-33972859
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3838 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237945.3|FTMT28300010830.1
Alternative gene names: TCONS_00028768


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -18.6167 non-coding 
CPAT coding probability 4.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00649:31 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00649:31
5.0 LINC00649:31
5.1 LINC00649:31
5.2 LINC00649:31