Transcript: LINC00649:42

Basic information

LNCipedia transcript ID: LINC00649:42 
LNCipedia gene ID: LINC00649
RefSeq ID: NR_134561
Location (hg38): chr21:33976382-33977691
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1134 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134561.1
Alternative gene names: LOC101928126


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -21.2675 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00649:42 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC00649:42
5.1 LINC00649:42
5.2 LINC00649:42