Transcript: LINC00649:5

Basic information

LNCipedia transcript ID: LINC00649:5 
LNCipedia gene ID: LINC00649
RefSeq ID: NR_038883
Location (hg38): chr21:33931122-33971186
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2657 bp
Exons: 3
Sources: Broad Institute; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028768; NR_038883.2
Alternative gene names: XLOC_013921; linc-SLC5A3-2; TCONS_00028768; LINC00649


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.9021 non-coding 
CPAT coding probability 8.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00649:5 yes no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITSN1-2:1
3.1 lnc-ITSN1-2:1
4.0 LINC00649:5
4.1 LINC00649:5
5.0 LINC00649:5
5.1 LINC00649:5
5.2 LINC00649:5