Transcript: LINC00649:8

Basic information

LNCipedia transcript ID: LINC00649:8 
LNCipedia gene ID: LINC00649
Location (hg38): chr21:33931212-33971186
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2567 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_038883
Alternative gene names: TCONS_00028768


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.6167 non-coding 
CPAT coding probability 8.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00649:8 yes no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITSN1-2:12
4.0 LINC00649:8
4.1 LINC00649:8
5.0 LINC00649:8
5.1 LINC00649:8
5.2 LINC00649:8