Transcript: LINC00649:9

Basic information

LNCipedia transcript ID: LINC00649:9 
HGNC Gene Symbol: LINC00649    
HGNC Full Gene Name: long intergenic non-protein coding RNA 649
Ensembl Gene ID: ENSG00000237945
Ensembl Transcript ID: ENST00000400353
RefSeq ID: NR_134558
Location (hg38): chr21:33931214-33971186
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2090 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028836; ENST00000400353; ENST00000400353.2; AP000569.8-002; OTTHUMT00000193773.1; NONHSAT081841; ENST00000400353.6; NR_134558.1
Alternative gene names: XLOC_013921; linc-SLC5A3-2; ENSG00000237945; AP000569.8; ENSG00000237945.1; OTTHUMG00000065819.4; ENSG00000237945.3; LINC00649; ENSG00000237945.7; TCONS_00028768


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.6167 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00649:9 yes no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITSN1-2:3
3.1 lnc-ITSN1-2:3
4.0 LINC00649:9
4.1 LINC00649:9
5.0 LINC00649:9
5.1 LINC00649:9
5.2 LINC00649:9