Transcript: LINC00652:4

Basic information

LNCipedia transcript ID: LINC00652:4 
HGNC Gene Symbol: LINC00652    
HGNC Full Gene Name: long intergenic non-protein coding RNA 652
Ensembl Gene ID: ENSG00000179935
Ensembl Transcript ID: ENST00000454749
Location (hg38): chr20:18788664-18794289
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 963 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454749; ENST00000454749.1; RP5-1068E13.3-001; OTTHUMT00000078196.1
Alternative gene names: ENSG00000179935; RP5-1068E13.3; ENSG00000179935.5; OTTHUMG00000031986.3; LINC00652; ENSG00000179935.9; HSPC072


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.2891 non-coding 
CPAT coding probability 5.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00652:4 no no no no

Available literature

  1. Zhang (2000), Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf78-1:4
3.1 lnc-C20orf78-1:4
4.0 LINC00652:4
4.1 LINC00652:4
5.0 LINC00652:4
5.1 LINC00652:4
5.2 LINC00652:4