Transcript: LINC00652:6

Basic information

LNCipedia transcript ID: LINC00652:6 
HGNC Gene Symbol: LINC00652    
HGNC Full Gene Name: long intergenic non-protein coding RNA 652
Ensembl Gene ID: ENSG00000179935
Ensembl Transcript ID: ENST00000412553
Location (hg38): chr20:18786065-18793993
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3299 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412553.5
Alternative gene names: ENSG00000179935.9; LINC00652; HSPC072


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.7328 non-coding 
CPAT coding probability 76.35% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00652:6 no no no no

Available literature

  1. Zhang (2000), Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00652:6
4.1 LINC00652:6
5.0 LINC00652:6
5.1 LINC00652:6
5.2 LINC00652:6