Transcript: LINC00658:18

Basic information

LNCipedia transcript ID: LINC00658:18 
HGNC Gene Symbol: LINC00658    
HGNC Full Gene Name: long intergenic non-protein coding RNA 658
Ensembl Gene ID: ENSG00000226995
Ensembl Transcript ID: ENST00000593667
Location (hg38): chr20:5431950-5432489
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT078321; ENST00000593667.1
Alternative gene names: ENSG00000226995.3; LINC00658; ENSG00000226995.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.0365 non-coding 
CPAT coding probability 3.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00658:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPCPD1-2:14
4.0 LINC00658:18
4.1 LINC00658:18
5.0 LINC00658:18
5.1 LINC00658:18
5.2 LINC00658:18