Transcript: LINC00659:6

Basic information

LNCipedia transcript ID: LINC00659:6 
HGNC Gene Symbol: LINC00659    
HGNC Full Gene Name: long intergenic non-protein coding RNA 659
Ensembl Gene ID: ENSG00000228705
Ensembl Transcript ID: ENST00000412500
Location (hg38): chr20:62774128-62775412
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412500.1; RP5-885L7.10-001; OTTHUMT00000080060.1; NONHSAT147175
Alternative gene names: ENSG00000228705.1; RP5-885L7.10; OTTHUMG00000032931.1; LINC00659;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.2452 non-coding 
CPAT coding probability 9.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00659:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCFL5-3:3
4.0 LINC00659:6
4.1 LINC00659:6
5.0 LINC00659:6
5.1 LINC00659:6
5.2 LINC00659:6