Transcript: LINC00661:17

Basic information

LNCipedia transcript ID: LINC00661:17 
HGNC Gene Symbol: LINC00661    
HGNC Full Gene Name: long intergenic non-protein coding RNA 661
Ensembl Gene ID: ENSG00000205396
Ensembl Transcript ID: ENST00000547102
Location (hg38): chr19:16021989-16027036
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 619 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547102.1; AC004790.2-004; OTTHUMT00000405649.1; ENST00000547102.5
Alternative gene names: ENSG00000205396.5; AC004790.2; OTTHUMG00000169715.2; ENSG00000205396.7; LINC00661; ENSG00000205396.11;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.8594 non-coding 
CPAT coding probability 9.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00661:17 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TPM4-2:13
4.0 LINC00661:17
4.1 LINC00661:17
5.0 LINC00661:17
5.1 LINC00661:17
5.2 LINC00661:17