Transcript: LINC00661:5

Basic information

LNCipedia transcript ID: LINC00661:5 
LNCipedia gene ID: LINC00661
Location (hg38): chr19:16015287-16018953
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 544 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000546512.1; AC004790.2-006; OTTHUMT00000405645.1; NONHSAT061536
Alternative gene names: ENSG00000205396.5; AC004790.2; OTTHUMG00000169715.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.8335 non-coding 
CPAT coding probability 27.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00661:5 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TPM4-2:4
4.0 LINC00661:5
4.1 LINC00661:5
5.0 LINC00661:5
5.1 LINC00661:5
5.2 LINC00661:5