Transcript: LINC00661:6

Basic information

LNCipedia transcript ID: LINC00661:6 
HGNC Gene Symbol: LINC00661    
HGNC Full Gene Name: long intergenic non-protein coding RNA 661
Ensembl Gene ID: ENSG00000205396
Ensembl Transcript ID: ENST00000546512
Location (hg38): chr19:16015287-16018953
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 544 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT061535; ENST00000546512.1; ENST00000546512.5
Alternative gene names: ENSG00000205396.7; LINC00661; ENSG00000205396.11;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.8335 non-coding 
CPAT coding probability 27.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00661:6 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TPM4-2:21
4.0 LINC00661:6
4.1 LINC00661:6
5.0 LINC00661:6
5.1 LINC00661:6
5.2 LINC00661:6