Transcript: LINC00661:7

Basic information

LNCipedia transcript ID: LINC00661:7 
LNCipedia gene ID: LINC00661
RefSeq ID: NR_026828
Location (hg38): chr19:16015634-16027462
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3342 bp
Exons: 9
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00026751; ENST00000549354.1; AC004790.2-001; OTTHUMT00000405577.2; NONHSAT061540; NR_026828; NR_026828.1
Alternative gene names: XLOC_012983; linc-TPM4-2; ENSG00000205396.5; AC004790.2; OTTHUMG00000169715.2; ; LINC00661


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 99.9394 coding 
CPAT coding probability 66.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00661:7 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TPM4-2:4
3.1 lnc-TPM4-2:6
4.0 LINC00661:7
4.1 LINC00661:7
5.0 LINC00661:7
5.1 LINC00661:7
5.2 LINC00661:7