Transcript: LINC00662:56

Basic information

LNCipedia transcript ID: LINC00662:56 
LNCipedia gene ID: LINC00662
Location (hg38): chr19:27715786-27793378
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 867 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000261824.2|ENST00000590677.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 22.5167 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00662:56 no no no no

Available literature

  1. Di Gaetano (2014), Sardinians genetic background explained by runs of homozygosity and genomic regions under positive selection., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00662:56
5.0 LINC00662:56
5.1 LINC00662:56
5.2 LINC00662:56