Transcript: LINC00662:7

Basic information

LNCipedia transcript ID: LINC00662:7 
LNCipedia gene ID: LINC00662
Location (hg38): chr19:27790494-27793940
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2050 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000500569; TCONS_00026762
Alternative gene names: ENSG00000247687; XLOC_013282; linc-ZNF681-4; AC006504.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.5606 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00662:7 no no no no

Available literature

  1. Di Gaetano (2014), Sardinians genetic background explained by runs of homozygosity and genomic regions under positive selection., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UQCRFS1-7:3
3.1 lnc-UQCRFS1-9:3
4.0 LINC00662:7
4.1 LINC00662:7
5.0 LINC00662:7
5.1 LINC00662:7
5.2 LINC00662:7