Transcript: LINC00667:16

Basic information

LNCipedia transcript ID: LINC00667:16 
LNCipedia gene ID: LINC00667
Location (hg38): chr18:5239981-5242414
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2434 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT057070; FPKM1_group_13562_transcript_4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.5669 non-coding 
CPAT coding probability 2.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00667:16 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Yu (1997), Large-scale concatenation cDNA sequencing., Genome Res.
  3. Andersson (1996), A "double adaptor" method for improved shotgun library construction., Anal. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP001496.1-1:17
4.0 LINC00667:16
4.1 LINC00667:16
5.0 LINC00667:16
5.1 LINC00667:16
5.2 LINC00667:16