Transcript: LINC00671:1

Basic information

LNCipedia transcript ID: LINC00671:1 
LNCipedia gene ID: LINC00671
Location (hg38): chr17:42879180-42898734
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 833 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000431109; ENST00000431109.2; AC100793.2-201; NONHSAT053782
Alternative gene names: ENSG00000213373; AC100793.2; ENSG00000213373.3; OTTHUMG00000132654.2; LINC00671;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.9256 non-coding 
CPAT coding probability 55.55% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00671:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AARSD1-1:1
3.1 lnc-AARSD1-1:1
4.0 LINC00671:1
4.1 LINC00671:1
5.0 LINC00671:1
5.1 LINC00671:1
5.2 LINC00671:1

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