Transcript: LINC00683:1

Basic information

LNCipedia transcript ID: LINC00683:1 
LNCipedia gene ID: LINC00683
Location (hg38): chr18:76615212-76625932
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3502 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000501193; TCONS_00026218
Alternative gene names: ENSG00000247645; XLOC_012728; linc-ZNF236-2; AC034110.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.3211 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00683:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-17M16.1.1-3:1
3.1 lnc-RP11-17M16.1.1-5:2
4.0 LINC00683:1
4.1 LINC00683:1
5.0 LINC00683:1
5.1 LINC00683:1
5.2 LINC00683:1