Transcript: LINC00683:4

Basic information

LNCipedia transcript ID: LINC00683:4 
HGNC Gene Symbol: LINC00683    
HGNC Full Gene Name: long intergenic non-protein coding RNA 683
Ensembl Gene ID: ENSG00000266256
Ensembl Transcript ID: ENST00000578803
RefSeq ID: NR_120419
Location (hg38): chr18:76619777-76623559
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2221 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000499318; TCONS_00026219; ENST00000578803.1; RP11-111H3.2-002; OTTHUMT00000445529.1; NONHSAT059940; NR_120419; NR_120419.1
Alternative gene names: ENSG00000247645; XLOC_012728; linc-ZNF236-2; AC034110.2; ENSG00000266256.1; RP11-111H3.2; OTTHUMG00000179274.1; LINC00683;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.5769 non-coding 
CPAT coding probability 5.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00683:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-17M16.1.1-3:2
3.1 lnc-RP11-17M16.1.1-5:3
4.0 LINC00683:4
4.1 LINC00683:4
5.0 LINC00683:4
5.1 LINC00683:4
5.2 LINC00683:4