Transcript: LINC00685:4

Basic information

LNCipedia transcript ID: LINC00685:4 
HGNC Gene Symbol: LINC00685    
HGNC Full Gene Name: long intergenic non-protein coding RNA 685
Ensembl Gene ID: ENSG00000226179
Ensembl Transcript ID: ENST00000391707
Location (hg38): chrX:320990-321851
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 428 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00016957; ENST00000391707.2; PPP2R3B-AS1-001; OTTHUMT00000055574.1; NONHSAT136026; ENST00000391707.7
Alternative gene names: XLOC_007907; linc-SHOX-4; ENSG00000226179.1; PPP2R3B-AS1; OTTHUMG00000021049.1; LINC00685; ENSG00000226179.6; OTTHUMT00000055574


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.8669 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00685:4 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLCXD1-1:2
3.1 lnc-PLCXD1-1:2
4.0 LINC00685:4
4.1 LINC00685:4
5.0 LINC00685:4
5.1 LINC00685:4
5.2 LINC00685:4