Transcript: LINC00687:1

Basic information

LNCipedia transcript ID: LINC00687:1 
LNCipedia gene ID: LINC00687
Location (hg38): chr20:11869044-11878569
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 659 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028317; NONHSAT078641
Alternative gene names: XLOC_013652; linc-JAG1-2; dJ1012F16.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.8825 non-coding 
CPAT coding probability 10.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00687:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JAG1-3:1
3.1 lnc-JAG1-5:1
4.0 LINC00687:1
4.1 LINC00687:1
5.0 LINC00687:1
5.1 LINC00687:1
5.2 LINC00687:1