Transcript: LINC00689:3

Basic information

LNCipedia transcript ID: LINC00689:3 
HGNC Gene Symbol: LINC00689    
HGNC Full Gene Name: long intergenic non-protein coding RNA 689
Ensembl Gene ID: ENSG00000231419
Ensembl Transcript ID: ENST00000447563
Location (hg38): chr7:159008354-159022680
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3824 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013109; ENST00000447563; ENST00000447563.1; AC004863.6-001; OTTHUMT00000322664.1; NONHSAT124554; ENST00000447563.5
Alternative gene names: XLOC_006322; ; ENSG00000231419; AC004863.6; ENSG00000231419.2; OTTHUMG00000151442.1; LINC00689; ENSG00000231419.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.628 non-coding 
CPAT coding probability 44.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00689:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR60-4:3
3.1 lnc-WDR60-4:2
4.0 LINC00689:3
4.1 LINC00689:3
5.0 LINC00689:3
5.1 LINC00689:3
5.2 LINC00689:3