Transcript: LINC00689:4

Basic information

LNCipedia transcript ID: LINC00689:4 
LNCipedia gene ID: LINC00689
RefSeq ID: NR_024394
Location (hg38): chr7:159008354-159026238
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4013 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT124555; NR_024394; NR_024394.1
Alternative gene names: ; LINC00689


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.628 non-coding 
CPAT coding probability 41.17% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00689:4 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR60-4:9
4.0 LINC00689:4
4.1 LINC00689:4
5.0 LINC00689:4
5.1 LINC00689:4
5.2 LINC00689:4