Transcript: LINC00700:3

Basic information

LNCipedia transcript ID: LINC00700:3 
HGNC Gene Symbol: LINC00700    
HGNC Full Gene Name: long intergenic non-protein coding RNA 700
Ensembl Gene ID: ENSG00000234962
Ensembl Transcript ID: ENST00000413603
RefSeq ID: NR_040253
Location (hg38): chr10:2005473-2014348
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2097 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000413603; ENST00000413603.1; RP11-69C17.1-003; OTTHUMT00000046440.1; NONHSAT010942; NR_040253; ENST00000413603.5; NR_040253.2
Alternative gene names: ENSG00000234962; RP11-69C17.1; ENSG00000234962.1; OTTHUMG00000017547.1; LINC00700; ENSG00000234962.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.159 non-coding 
CPAT coding probability 13.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00700:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADARB2-2:2
3.1 lnc-ADARB2-2:2
4.0 LINC00700:3
4.1 LINC00700:3
5.0 LINC00700:3
5.1 LINC00700:3
5.2 LINC00700:3