Transcript: LINC00707:4

Basic information

LNCipedia transcript ID: LINC00707:4 
HGNC Gene Symbol: LINC00707    
HGNC Full Gene Name: long intergenic non-protein coding RNA 707
Ensembl Gene ID: ENSG00000238266
Ensembl Transcript ID: ENST00000436383
RefSeq ID: NR_038291
Location (hg38): chr10:6779598-6842906
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3070 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000436383; ENST00000436383.1; RP11-799O21.1-001; OTTHUMT00000046670.1; NR_038291; NR_038291.1
Alternative gene names: ENSG00000238266; RP11-799O21.1; ENSG00000238266.1; OTTHUMG00000017627.1; LINC00707;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.4095 non-coding 
CPAT coding probability 8.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00707:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL137145.1-6:3
3.1 lnc-AL137145.1-6:3
4.0 LINC00707:4
4.1 LINC00707:4
5.0 LINC00707:4
5.1 LINC00707:4
5.2 LINC00707:4