Transcript: LINC00709:2

Basic information

LNCipedia transcript ID: LINC00709:2 
HGNC Gene Symbol: LINC00709    
HGNC Full Gene Name: long intergenic non-protein coding RNA 709
Ensembl Gene ID: ENSG00000230014
Ensembl Transcript ID: ENST00000458168
Location (hg38): chr10:9275833-9287057
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 494 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017787; ENST00000458168; ENST00000458168.1; RP4-660B20.1-001; OTTHUMT00000046735.1; NONHSAT011342
Alternative gene names: XLOC_008387; linc-CELF2-4; ENSG00000230014; RP4-660B20.1; ENSG00000230014.1; OTTHUMG00000017652.1; LINC00709;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -412.2832 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00709:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GATA3-8:1
3.1 lnc-GATA3-8:1
4.0 LINC00709:2
4.1 LINC00709:2
5.0 LINC00709:2
5.1 LINC00709:2
5.2 LINC00709:2