Transcript: LINC00836:1

Basic information

LNCipedia transcript ID: LINC00836:1 
LNCipedia gene ID: LINC00836
Ensembl Gene ID: ENSG00000280809
Ensembl Transcript ID: ENST00000626230
RefSeq ID: NR_108068
Location (hg38): chr10:25651712-25732935
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1640 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT011808; NR_108068; ENST00000626230.2; NR_108068.1
Alternative gene names: ENSG00000280809.2; LINC00836;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.077 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00836:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR158-2:3
4.0 LINC00836:1
4.1 LINC00836:1
5.0 LINC00836:1
5.1 LINC00836:1
5.2 LINC00836:1