Transcript: LINC00837:6

Basic information

LNCipedia transcript ID: LINC00837:6 
LNCipedia gene ID: LINC00837
Location (hg38): chr10:28789312-28795973
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3834 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00017732
Alternative gene names: XLOC_008762; linc-MPP7-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.0197 non-coding 
CPAT coding probability 12.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00837:6 no no no no

Available literature

  1. Ha (2014), A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MPP7-3:2
3.1 lnc-MPP7-4:2
4.0 LINC00837:6
4.1 LINC00837:6
5.0 LINC00837:6
5.1 LINC00837:6
5.2 LINC00837:6