Transcript: LINC00838:2

Basic information

LNCipedia transcript ID: LINC00838:2 
LNCipedia gene ID: LINC00838
RefSeq ID: NR_038932
Location (hg38): chr10:33759713-33772680
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2958 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT012685; NR_038932; NR_038932.1
Alternative gene names: ; LINC00838


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.8624 non-coding 
CPAT coding probability 7.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00838:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PARD3-1:6
4.0 LINC00838:2
4.1 LINC00838:2
5.0 LINC00838:2
5.1 LINC00838:2
5.2 LINC00838:2