Transcript: LINC00838:3

Basic information

LNCipedia transcript ID: LINC00838:3 
LNCipedia gene ID: LINC00838
Location (hg38): chr10:33765739-33772670
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1666 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018478; NONHSAT012687
Alternative gene names: XLOC_008776; linc-NRP1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.0703 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00838:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PARD3-1:1
3.1 lnc-PARD3-1:1
4.0 LINC00838:3
4.1 LINC00838:3
5.0 LINC00838:3
5.1 LINC00838:3
5.2 LINC00838:3