Transcript: LINC00838:4

Basic information

LNCipedia transcript ID: LINC00838:4 
LNCipedia gene ID: LINC00838
Location (hg38): chr10:33759714-33772658
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2935 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00017733
Alternative gene names: XLOC_008776; linc-NRP1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.8624 non-coding 
CPAT coding probability 7.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00838:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PARD3-1:2
3.1 lnc-PARD3-1:3
4.0 LINC00838:4
4.1 LINC00838:4
5.0 LINC00838:4
5.1 LINC00838:4
5.2 LINC00838:4