Transcript: LINC00838:5

Basic information

LNCipedia transcript ID: LINC00838:5 
HGNC Gene Symbol: LINC00838    
HGNC Full Gene Name: long intergenic non-protein coding RNA 838
Ensembl Gene ID: ENSG00000261683
Ensembl Transcript ID: ENST00000562956
Location (hg38): chr10:33759713-33772658
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2936 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562956.1; RP11-359J23.1-001; OTTHUMT00000431585.1
Alternative gene names: ENSG00000261683.1; RP11-359J23.1; OTTHUMG00000176162.1; LINC00838;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.8624 non-coding 
CPAT coding probability 7.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00838:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PARD3-1:2
4.0 LINC00838:5
4.1 LINC00838:5
5.0 LINC00838:5
5.1 LINC00838:5
5.2 LINC00838:5