Transcript: LINC00839:1

Basic information

LNCipedia transcript ID: LINC00839:1 
LNCipedia gene ID: LINC00839
Location (hg38): chr10:42475491-42495336
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2305 bp
Exons: 5
Sources: Broad Institute
Alternative transcript names: TCONS_00017673
Alternative gene names: XLOC_008462; linc-BMS1-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 38.0929 non-coding 
CPAT coding probability 72.35% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00839:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BMS1-3:1
3.1 lnc-BMS1-3:1
4.0 LINC00839:1
4.1 LINC00839:1
5.0 LINC00839:1
5.1 LINC00839:1
5.2 LINC00839:1