Transcript: LINC00839:11

Basic information

LNCipedia transcript ID: LINC00839:11 
LNCipedia gene ID: LINC00839
Location (hg38): chr10:42475717-42494836
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1568 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT012878
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.1855 non-coding 
CPAT coding probability 19.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00839:11 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BMS1-3:10
4.0 LINC00839:11
4.1 LINC00839:11
5.0 LINC00839:11
5.1 LINC00839:11
5.2 LINC00839:11