Transcript: LINC00839:5

Basic information

LNCipedia transcript ID: LINC00839:5 
HGNC Gene Symbol: LINC00839    
HGNC Full Gene Name: long intergenic non-protein coding RNA 839
Ensembl Gene ID: ENSG00000185904
Ensembl Transcript ID: ENST00000429940
Location (hg38): chr10:42475543-42495336
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2253 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429940; ENST00000429940.2; RP11-178A10.1-201; ENST00000429940.6
Alternative gene names: ENSG00000185904; RP11-178A10.1; ENSG00000185904.6; OTTHUMG00000018010.1; ENSG00000185904.7; LINC00839; ENSG00000185904.11;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 38.0929 non-coding 
CPAT coding probability 72.41% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00839:5 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BMS1-3:3
3.1 lnc-BMS1-3:2
4.0 LINC00839:5
4.1 LINC00839:5
5.0 LINC00839:5
5.1 LINC00839:5
5.2 LINC00839:5