Transcript: LINC00839:9

Basic information

LNCipedia transcript ID: LINC00839:9 
HGNC Gene Symbol: LINC00839    
HGNC Full Gene Name: long intergenic non-protein coding RNA 839
Ensembl Gene ID: ENSG00000185904
Ensembl Transcript ID: ENST00000424751
Location (hg38): chr10:42475628-42495336
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2252 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT012876; ENST00000424751.2
Alternative gene names: ENSG00000185904.7; LINC00839; ENSG00000185904.11;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.595 non-coding 
CPAT coding probability 18.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00839:9 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BMS1-3:8
4.0 LINC00839:9
4.1 LINC00839:9
5.0 LINC00839:9
5.1 LINC00839:9
5.2 LINC00839:9