Transcript: LINC00857:1

Basic information

LNCipedia transcript ID: LINC00857:1 
HGNC Gene Symbol: LINC00857    
HGNC Full Gene Name: long intergenic non-protein coding RNA 857
Ensembl Gene ID: ENSG00000237523
Ensembl Transcript ID: ENST00000422847
RefSeq ID: NR_038464
Location (hg38): chr10:80207710-80219657
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2161 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000422847; ENST00000422847.1; RP11-40F6.2-001; OTTHUMT00000049054.1; NONHSAT015237; NR_038464; NR_038464.1
Alternative gene names: ENSG00000237523; RP11-40F6.2; ENSG00000237523.1; OTTHUMG00000018605.1; LINC00857;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.811 non-coding 
CPAT coding probability 3.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00857:1 no no no no

Available literature

  1. Dudek (2018), LINC00857 expression predicts and mediates the response to platinum-based chemotherapy in muscle-invasive bladder cancer., Cancer Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL359195.1-1:1
3.1 lnc-AL359195.1-1:1
4.0 LINC00857:1
4.1 LINC00857:1
5.0 LINC00857:1
5.1 LINC00857:1
5.2 LINC00857:1