Transcript: LINC00867:1

Basic information

LNCipedia transcript ID: LINC00867:1 
HGNC Gene Symbol: LINC00867    
HGNC Full Gene Name: long intergenic non-protein coding RNA 867
Ensembl Gene ID: ENSG00000232139
Ensembl Transcript ID: ENST00000445161
RefSeq ID: NR_108045
Location (hg38): chr10:118357108-118359203
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000445161; ENST00000445161.1; RP11-319I23.2-001; OTTHUMT00000050603.1; NONHSAT139998; NR_108045; ENST00000445161.5; NR_108045.1
Alternative gene names: ENSG00000232139; RP11-319I23.2; ENSG00000232139.1; OTTHUMG00000019132.1; LINC00867; ENSG00000232139.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.6197 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00867:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NANOS1-1:1
3.1 lnc-NANOS1-1:1
4.0 LINC00867:1
4.1 LINC00867:1
5.0 LINC00867:1
5.1 LINC00867:1
5.2 LINC00867:1