Transcript: LINC00868:3

Basic information

LNCipedia transcript ID: LINC00868:3 
HGNC Gene Symbol: LINC00868    
HGNC Full Gene Name: long intergenic non-protein coding RNA 868
Ensembl Gene ID: ENSG00000267535
Ensembl Transcript ID: ENST00000592919
Location (hg38): chr17:76850176-76861830
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 853 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000592919.1
Alternative gene names: ENSG00000267535.1; LINC00868;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.0078 non-coding 
CPAT coding probability 46.67% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00868:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MGAT5B-2:3
4.0 LINC00868:3
4.1 LINC00868:3
5.0 LINC00868:3
5.1 LINC00868:3
5.2 LINC00868:3