Transcript: LINC00880:2

Basic information

LNCipedia transcript ID: LINC00880:2 
LNCipedia gene ID: LINC00880
Location (hg38): chr3:157081668-157123002
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2015 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00005401
Alternative gene names: XLOC_003303; linc-SSR3-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5314 non-coding 
CPAT coding probability 15.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00880:2 no no no no

Available literature

  1. Wu (2018), LncRNA LINC00880 promotes cell proliferation, migration, and invasion while inhibiting apoptosis by targeting CACNG5 through the MAPK signaling pathway in spinal cord ependymoma., J. Cell. Physiol.
  2. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCNL1-1:2
3.1 lnc-CCNL1-1:2
4.0 LINC00880:2
4.1 LINC00880:2
5.0 LINC00880:2
5.1 LINC00880:2
5.2 LINC00880:2