Transcript: LINC00882:4

Basic information

LNCipedia transcript ID: LINC00882:4 
LNCipedia gene ID: LINC00882
Location (hg38): chr3:107109941-107240638
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 452 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000477210; ENST00000477210.1; RP11-280F2.2-003; OTTHUMT00000353790.1
Alternative gene names: ENSG00000242759; RP11-280F2.2; ENSG00000242759.1; OTTHUMG00000159196.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.606 non-coding 
CPAT coding probability 26.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00882:4 no no no no

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD47-4:3
3.1 lnc-CBLB-7:2
4.0 LINC00882:4
4.1 LINC00882:4
5.0 LINC00882:4
5.1 LINC00882:4
5.2 LINC00882:4