Transcript: LINC00882:50

Basic information

LNCipedia transcript ID: LINC00882:50 
LNCipedia gene ID: LINC00882
Ensembl Gene ID: ENSG00000239828
Ensembl Transcript ID: ENST00000599131
Location (hg38): chr3:107321057-107322744
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 345 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT091046; ENST00000599131.1
Alternative gene names: ENSG00000239828.2; RP11-446H18.5; ENSG00000239828.6; ; AC063944.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.6397 non-coding 
CPAT coding probability 2.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00882:50 no no no no

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD47-3:6
4.0 lnc-CD47-3:6
4.1 LINC00882:50
5.0 LINC00882:50
5.1 LINC00882:50
5.2 LINC00882:50