Transcript: LINC00882:7

Basic information

LNCipedia transcript ID: LINC00882:7 
LNCipedia gene ID: LINC00882
Location (hg38): chr3:107111562-107240627
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 875 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00005803; ENST00000479612; ENST00000479612.1; RP11-280F2.2-004; OTTHUMT00000353791.1; NONHSAT091024
Alternative gene names: XLOC_003204; linc-CBLB-6; ENSG00000242759; RP11-280F2.2; ENSG00000242759.1; OTTHUMG00000159196.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.606 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00882:7 no no no no

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD47-4:5
3.1 lnc-CBLB-7:5
4.0 LINC00882:7
4.1 LINC00882:7
5.0 LINC00882:7
5.1 LINC00882:7
5.2 LINC00882:7