Transcript: LINC00884:4

Basic information

LNCipedia transcript ID: LINC00884:4 
HGNC Gene Symbol: LINC00884    
HGNC Full Gene Name: long intergenic non-protein coding RNA 884
Ensembl Gene ID: ENSG00000233058
Ensembl Transcript ID: ENST00000448892
Location (hg38): chr3:194487454-194518279
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2680 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000448892; ENST00000448892.1; AC046143.7-001; OTTHUMT00000342809.1; NONHSAT094094
Alternative gene names: ENSG00000233058; AC046143.7; ENSG00000233058.1; OTTHUMG00000156037.1; LINC00884;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.0702 non-coding 
CPAT coding probability 6.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00884:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM43A-7:1
3.1 lnc-FAM43A-8:1
4.0 LINC00884:4
4.1 LINC00884:4
5.0 LINC00884:4
5.1 LINC00884:4
5.2 LINC00884:4