Transcript: LINC00887:9
Basic information
LNCipedia transcript ID: LINC00887:9
HGNC Gene Symbol: LINC00887
HGNC Full Gene Name:
long intergenic non-protein coding RNA 887
Ensembl Gene ID:
ENSG00000214145
Ensembl Transcript ID:
ENST00000397644
Location (hg38): chr3:194301446-194306031
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 416 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005925; ENST00000397644; ENST00000397644.2; RP11-513G11.1-003; OTTHUMT00000342629.1; NONHSAT094082
Alternative gene names: XLOC_003385; linc-ATP13A4-8; ENSG00000214145; RP11-513G11.1; ENSG00000214145.2; OTTHUMG00000155982.1; LINC00887; ENSG00000214145.6; HEIRCC
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| LINC00887:9 | no | no | no | no |
Available literature
- Xiong (2017), High expression of the long non-coding RNA HEIRCC promotes Renal Cell Carcinoma metastasis by inducing epithelial-mesenchymal transition., Oncotarget
- Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics
- Lin (2015), The long noncoding RNA landscape in hypoxic and inflammatory renal epithelial injury., Am. J. Physiol. Renal Physiol.
- Yu (2012), LncRNAs expression signatures of renal clear cell carcinoma revealed by microarray., PLoS ONE
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 1.3 | lnc-CPN2-1:8 |
| 3.1 | lnc-CPN2-1:8 |
| 4.0 | LINC00887:9 |
| 4.1 | LINC00887:9 |
| 5.0 | LINC00887:9 |
| 5.1 | LINC00887:9 |
| 5.2 | LINC00887:9 |