Transcript: LINC00892:4

Basic information

LNCipedia transcript ID: LINC00892:4 
HGNC Gene Symbol: LINC00892    
HGNC Full Gene Name: long intergenic non-protein coding RNA 892
Ensembl Gene ID: ENSG00000233093
Ensembl Transcript ID: ENST00000429841
Location (hg38): chrX:136639667-136642426
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 529 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017016; ENST00000429841.1; RP3-527F8.2-003; OTTHUMT00000326700.1
Alternative gene names: XLOC_008077; linc-CD40LG; ENSG00000233093.1; RP3-527F8.2; OTTHUMG00000022511.2; LINC00892; ENSG00000233093.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.0789 non-coding 
CPAT coding probability 15.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00892:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD40LG-1:2
3.1 lnc-CD40LG-1:2
4.0 LINC00892:4
4.1 LINC00892:4
5.0 LINC00892:4
5.1 LINC00892:4
5.2 LINC00892:4