Transcript: LINC00894:6

Basic information

LNCipedia transcript ID: LINC00894:6 
HGNC Gene Symbol: LINC00894    
HGNC Full Gene Name: long intergenic non-protein coding RNA 894
Ensembl Gene ID: ENSG00000235703
Ensembl Transcript ID: ENST00000458274
Location (hg38): chrX:149939739-149940832
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458274; ENST00000458274.1; RP13-507I23.1-008; OTTHUMT00000082894.1; NONHSAT138961
Alternative gene names: ENSG00000235703; RP13-507I23.1; ENSG00000235703.1; OTTHUMG00000022638.4; LINC00894; ENSG00000235703.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.6306 non-coding 
CPAT coding probability 4.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00894:6 no no no no

Available literature

  1. Zhang (2018), Downregulation of LINC00894-002 Contributes to Tamoxifen Resistance by Enhancing the TGF-β Signaling Pathway., Biochemistry Mosc.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAMLD1-1:2
3.1 lnc-MAGEA8-2:2
4.0 LINC00894:6
4.1 LINC00894:6
5.0 LINC00894:6
5.1 LINC00894:6
5.2 LINC00894:6